Perl

Perl

Perl is an interpreted language with syntax similar to bash and PHP. It's a high level, general purpose language that is used primarily to automate repetitive tasks, and to parse and process text. Indeed, text processing was the original intended use for the language, although it has grown to be an extremely flexible language for many different types of processing.

Running Perl

Like many scripting languages, Perl programs can be run in several ways. The programs, or scripts, themselves are plain text files, usually ending in '.pl' to indicate that it is a Perl script. Given a Perl script file, the most common ways to execute the script are shown below.

• Pass the script as input to the 'perl' executable:

  perl -w SCRIPT

• Execute the script directly by adding the following line to the top of the script:

  #!/usr/bin/perl -w
  

  Then, change the script to be executable, and finally execute the script:

  chmod a+x SCRIPT
  ./SCRIPT 
  

While flexibility is one of the major strengths of Perl, the flexibility in the language itself can often lead to unintended consequences. To overcome this, it is good practice to explicitly enable warnings and strict behavior for you scripts. The -w above when running perl gets you part of the way there, and although it's not necessary to supply the -w it is nearly always the right thing to do. You should also add the line:

use strict;

to all of your scripts, near the top, to enable strict error checking.

Variables and Arrays

Standard variables start with a dollar sign, $, at the beginning of their names. Unlike shell scripts, the $ is always used, regardless of whether the variable is being set or accessed. As with other scripting languages, you don't specify the type of the variable; it will be used treated as a integer, floating point number, string, etc, depending on how it is used in your script.

 #this is an integer
 $i=5;
 #this is a string
 $msg="my string";

Comments start with the number/sharp/hash sign, #, and extend until the end of the line. All non-comment statements end with a semicolon, ;. You can print variables with the print function:

print $msg;

Variables can be used inside strings, and the value of that variable will be included in the string. (Note that you can also use the printf function when you need specific formatting of the output).

 $i=5;
 print "The value of i is $i";
 

This will generate the string:

The value of i is 5

All variables are global by default, so you need to specify locality if you want local variables. This can be done with the local and my keywords. Generally, my is safer and faster, and is therefore used most often. If a variable is defined by my in a block, it will be local to the block. If a variable is defined by local, any subroutine call from that block will also have that variable defined. For example:

 $i=0;
 while($i<5)
 {
   my $squared = $i*$i;
   $cubed = $i*$i*$i;
   $i++;
 }
 print $squared;
 print $cubed;

In the above program segment, $squared is defined with my inside the while loop, so it is only defined inside that loop. $cubed is not given any special scope, so it is a global variable. Hence, after the loop, $squared will be undefined, but $cubed with have the value 64 (the last value it was assigned in the loop).

Arrays

Arrays are represented with two different symbols, depending on whether you are referring to elements of the array, or the entire array. Array variable names start with @ when declaring them or when you are referring to the array itself. The normal $ is used when you want to access individual elements of the array. Declaring arrays is fairly easy. You can enter all elements one by one, or you can enter them together:

 $student[0]="Alice";
 $student[1]="Bruce";
 $student[2]="Charlie";
 $student[3]="Dan";

or alternatively

 @student=("Alice","Bruce","Charlie","Dan");

In general, lists strings or variables enclosed in parentheses, (value1,value2,...,valuen ), are interpreted as arrays. You can access the contents with an array index:

 print $student[2];

You can also print the whole array:

print @student;

The above will concatenate all the elements together without a delimiter. Alternatively, you can print the array inside of a quotes

print "@student';

which will print each elements separated by a space.

The current size of an array can be accessed with the scalar() function:

$sz=scalar(@student);

You can also use special syntax to access the index of the last element in an array like so:

$last_index = $#student;

Note that you start the array variable with $# instead of @ or just $. In the example above, scalar(@student) is 4, and $#student is 3.

You can declare a sequence with

(START..END);

START and END could be numbers or a characters:

@newarray = (1 .. 20);
@newchars = ('l' .. 't');

There is also support for adding and removing elements.

• push() - adds an element to the end of an array.
• unshift() - adds an element to the beginning of an array.
• pop() - removes the last element of an array.
• shift() - removes the first element of an array.

push() and unshift() take an array and a variable as arguments:

push @ARRAY, VARIABLE

VARIABLE can actually be a single variable or another array:

push @student, "Eve";
push @student, @newstudents;
push @student, ("Frank","Gabriel");

pop() and shift() take only the array as an argument:

$laststudent = pop(@student);

You can use the slice operation to retrieve portions of an array.

@newarray = @student[1..3]; # elements 1-3
@newarray = @student[1..3,5,7,9..15]; # elements 1-3,5,7,9-15

The splice() function lets you replace arbitrary elements within an array. Here is the general syntax:

splice(@ARRAY,STARTING_INDEX,LENGTH,@REPLACING-ARRAY);
 

Here is an example that replaces element 3 with Jerry and elements 4 with Lena:

splice(@student,3,2,("Jerry","Lena"));

The split() operation creates an array from a string. It takes a delimiter and a string as arguments. For example:

@array=split(':',"test:array:1:2:3");

The above will produce an array with 5 elements (test,array,1,2,3).

The join() function does the reverse, i.e., it creates a string from the elements of an array. It takes a delimiter and an array as arguments. For example:

$studentNames=join(',',@student);

The above will form one string with every element from @student separated by a comma.

Perl also has hash arrays, which are similar to associate arrays. Whereas arrays are represented with the @, hash arrays are represented by the %symbol.

%ages = ("Leela", 25,
        "Fry", 28,
        "Bender", 4,
        "Lord Nibbler", "Unknown");

Elements within a hash array accessed by prefacing the hash array name with $ and then using curly braces for the index. For example:

$ages{"Leela"};	# Returns 25
$ages{"Fry"};		# Returns 28
$ages{"Bender"};	# Returns 4
$ages{"Lord Nibbler"};	# Returns "Unknown"

Conditional Statements

if statements work as they do in most other languages. The general format is

if ( CONDITION )
{
  #some statements
}
elsif ( ANOTHER_CONDITION )
{
  #whatever
}
else
{
  #other stuff
}

The standard comparison operators work as usual, including ==, <, >, etc. The only thing to be aware of is that you should use eq and neq to compare strings instead of == and !=.

if($string eq "some string")
{
  print "strings are equal\n";
}
elsif($int == 5)
{
  print "integer is five\n";
}

Loops

There are three main types of loops. for and while loops work similarly to other languages. Here are the general forms:

for(initialization;condition;loop_increment)
{
}
 
while(condition)
{
}

Here are simple examples:

 $sum=0;
 $i=1;
 while($i<=10)
 {
   $sum=$sum+$i;
   $i++;
 }
 print "sum is $sum\n";

 for($j=0; $j<5; ++$j)
 {
   print "j is $j\n";
 }

next and last are special commands that will jump to the next loop iteration, or to the end of the loop, respectively. For example:

 for($j=0; $j<5; ++$j)
 {
   if($j == 2) { next; }
   if($j == 4) { last; }
   print "j is $j\n";
 }

The above code will output:

j is 0
j is 1
j is 3

Finally, there is the foreach loop. foreach loops are most useful when iterating through arrays or hashs. Here is the general form:

foreach $iterator (@array)
{
}

For example, to print out all the values in an array, you could do this:

 @names = ('Bugs', 'Daffy', 'Marvin');
 foreach $name (@names)
 {
   print "$name\n";
 } 

Functions

Perl functions are identified with the keyword sub followed by the function name. Arguments passed to functions are stored in a special array @_. You can either access all of the arguments by assigning them to local variables via @_ or you can use the shift function. Here is the general form for a function:

 sub functionname
 {
   my ($arg1,$arg2,...,$argn)=@_;
 }

Or:

 sub functionname
 {
   my $arg1 = shift;
   my $arg2 = shift;
   ...
   my $argn = shift;
 }

Here is a simple function to add two numbers and a call to that function (note that functions can be defined above or below where they are called):

 sub add
 {
   my ($x,$y) = @_;
   return ($x+$y);
 }  

 print "sum of 2+5=" . add(2,5) . "\n";

The command line arguments to the Perl script (excluding the script name) are stored in the array @ARGV. For example, the following code prints out the number of command line arguments:

 print "There are " . scalar(@ARGV) . " arguments\n";

Regular Expressions

Perl is widely known for excellence in text processing, and regular expressions are one of the big factors behind this fame. There is a lot to learn about regular expressions, and here is only a very brief introduction that serves as a starting point. Please refer to the CPAN tutorial (from which the following is extracted) and reference for more complete and in-depth coverage.

A regular expression (or simply regex) can be thought of as a pattern, composed of characters and symbols, which expresses what you want to search in a body of text. A regex is used in Perl functions such as string matching, search and replace, and splitting. In the following, we will first look at some typical ways of defining regex. Then we will give examples of how they are used in Perl functions.

Defining Regular Expressions

A regex is marked by //. The simplest regex is just a word, or more generally, a string of characters. Such a regex simply means that the pattern to be matched is that word.

/World/                       # matches the whole word 'World' (case sensitive)
/Hello World /                # matches the whole phrase with a space at the end

Not all characters can be used 'as is' in a match. Some characters, called metacharacters, are reserved for use in regex notation. The metacharacters are

{}[]()^$.|*+?\

A metacharacter can be used in the regex by putting a backslash before it:

/\/usr\/bin\/perl/            # matches the word '/usr/bin/perl' 

The backslash also works for non-printable ASCII characters, represented as escape sequences. Common examples are \s for a space, \t for a tab, \n for a newline, and \r for a carriage return.

A character class allows a set of possible characters, rather than just a single character, to match at a particular point in a regex. Character classes are denoted by brackets [...] , with the set of characters to be possibly matched inside. A "-" can be used to specify range of characters. Here are some examples:

/[yY][eE][sS]/                # matches 'yes' in a case-insensitive way (e.g., 'Yes', 'YES', 'yes', etc.)
/item[012345]/                # matches 'item0' or ... or 'item5'
/item[0-5]/                   # does the same thing
/[0-9a-fA-F]/                 # matches a hexadecimal digit

Different character strings can be matched with the alternation metacharacter '|'. For example:

/cat|dog|bird/                # matches 'cat', or 'dog', or 'bird'

We can group parts of a regex by enclosing them in parentheses '()'. For example:

/House(cat|keeper)/           # matches 'Housecat' or 'Housekeeper'

One of the powerful features of regex is matching repetitions. The quantifier metacharacters ?, * , + , and {} allow us to determine the number of repeats of a portion of a regex we consider to be a match. Quantifiers are put immediately after the character, character class, or grouping that we want to specify. They have the following meanings:

/a?/     # matches 'a' 1 or 0 times
/a*/     # matches 'a' 0 or more times, i.e., any number of times
/a+/     # matches 'a' 1 or more times, i.e., at least once
/a{3,5}/ # matches at least 3 times, but not more than 5 times.
/a{3,}/  # matches at least 3 or more times
/a{3}/   # matches exactly 3 times

Here are more examples:

/[a-zA-Z0-9]+.pl/             # matches any .pl filename that consists of characters or digits
/[a-z]+\s+\d*/                # matches a lowercase word, at least some space, and any number of digits

Using Regular Expressions

Regex is used almost any time when string matching is needed. To start, consider testing if a string contains the matching pattern (e.g., a regex). The operator =~ associates the string with the regex match and produces a true value if the regex matched, or false if the regex did not match. Perl will always match at the earliest possible point in the string. For example:

print "It matches\n" if "Hello World" =~ /World/;     # prints "It matches"
print "It matches\n" if "Hello World" =~ /o/;         # prints "It matches" (it matches the 'o' in 'Hello')
print "It matches\n" if "Hello World" =~ / o/;        # does not match

Search and replace is performed using the format =~ s/regex/replacement/modifiers. The replacement is a Perl double quoted string that replaces in the string whatever is matched with the regex. For example:

$x = "I batted 4 for 4";
$x =~ s/4/four/;                         # $x now contains "I batted four for 4"
$x = "I batted 4 for 4";
$x =~ s/4/four/g;                        # $x now contains "I batted four for four"

In the above example, the global modifier g asks Perl to search and replace all occurrences of the regex in the string. If there is a match, s/// returns the number of substitutions made, otherwise it returns false.

Another use of regex is to split a string into a set of strings marked by delimiters, where the delimiters are specified by a given regex. This is done using the split function. For example, to split a string into words, do:

$x = "Calvin and Hobbes";
@word = split /\s+/, $x;                 # $word[0] = 'Calvin'
                                         # $word[1] = 'and'
                                         # $word[2] = 'Hobbes'

As seen above, the split function returns the separated strings as an array. If the empty regex // is used, the string is split into individual characters.

Perl Modules

Perl modules are simply Perl libraries that provide new or enhanced functionality. Although some modules are distributed as part of the core Perl distribution, most of them are written and maintained by other Perl users or developers who needed some specific functionality that was missing. The CPAN repository is the portal for finding and getting modules. CPAN also contains manuals for the modules, most of which contain examples. Generally speaking, the modules are all perl programs, although sometimes they require libraries from other languages.

The typical location for perl modules is /usr/lib/perl/XXX where XXX is the version of perl. For current Ubuntu installs, the perl version is 5.10, so the modules are in /usr/lib/perl/5.10/. You can define other locations by setting the PERL5LIB environmental variable.

export PERL5LIB=directory1:directory2

A module is contained in .pm files located in one of the module directories (either the default or through PERL5LIB). They are accessed in a perl script by including them via the use command. Most modules are grouped in to common packages. For example, there is a DBI package that contains many database interface modules. One of those modules is the mysql module. To include that module (assuming you have it installed on your system) in your script, you would add this line:

use DBI::mysql;

If a module you want is not installed on your system, you need to install it either manually or through the automated cpan command. The later approach takes a bit of set up, but it makes installing new modules much simpler.

Manual Module Installation

Search the CPAN website for the module you want, then download the module. Untar it (or unzip it) and change to the directory containing the source code. You will notice that there is a file named Makefile.PL. It's a perl script that generates a makefile for your perl installation. Run this:

perl Makefile.PL

This generates the actual makefile you need to build the module. If you want to install the module to a non-default module location, set the PREFIX environment variable:

perl Makefile.PL PREFIX=my_module_directory

Once you have the makefile, you can build the module, test it, and install it. Most Perl modules require testing to ensure they are functioning correctly on your system, so doing the tests is part of the build process. If a critical component of the test fails, you may have to resolve any problems before moving on.

make
make test
make install

Some modules require prerequisites which you need to install yourself. In some cases, the dependencies can easily spiral out of control so that it becomes very difficult to install everything manually, which is why the CPAN approach is preferred.

Automated Module Installation

cpan is a perl script that comes with the perl package that uses the CPAN perl module. It is a tool that installs new modules with minimum user interaction and that auto installs prerequisites. To install new modules system-wide, you'll need to run cpan as root. So, run:

sudo cpan

If it is the first time you are running cpan, you will need to answer some configuration questions. When prompted, you should select the automated configuration to get things going without any extra hassle. You will then get to the cpan prompt, where you can run commands to search for and install new modules.

cpan>

The first thing should probably install is Bundle::CPAN which installs a bunch of packages that make cpan easier to use. To do that, at the cpan> prompt, run:

cpan> install Bundle::CPAN

Note that as it installs, it will probably ask if it's ok to install additional packages and such along the way. It's generally ok to accept whatever it asks when you are prompted. The help command shows you all the available commands and options. You can search for a module with the i command:

cpan> i /KEYWORDS/

You can install a module with the install command:

cpan> install MODULE

install downloads the module, compiles and tests it, and finally installs it if everything went well. The downloaded modules are stored under your ~/.cpan directory (unless you specified another one during configuration), in case you need to look at source code or anything related to the module. Although cpan will download any perl modules that are needed by the module you actually want to install, it might fail if any of the modules rely on non-perl resources elsewhere on the system (e.g., graphics libraries). If that happens, you can go to the build directory, ~/.cpan/build/MODULE, and try to fix the problem.

Connecting MySQL with Perl

In order to connect to a mysql server, you need to have the DBI module and DBD::mysql installed on your system. The DBI is a generic database interface that is relatively easy to use, and a good overall description of the DBI is here.

Once you have the correct modules installed, you can connect to a mysql server with the function:

DBI->connect(DATABASE_DESCRIPTION,USERNAME,PASS);

The database description contains the type of the database (so that the DBI knows how to connect), the name of the database and the host name. It returns a handle that you will use to execute SQL statements on that database. Here is an example to connect the grades databases on the localhost:

 use DBI;
 $dbh=DBI->connect("DBI:mysql:database=grades",'dbuser','dbpass') or die "error connecting to database";  #note that $dbh is your database handle

Once you have the connection established, you can send SQL queries to the database server. First you need to prepare your SQL statement with the prepare function on the database handle:

$stmth = $dbh->prepare("SQL STATEMENT");

prepare returns a statement handle that you will use when executing or working with that statement. Here is an example:

$sth=$dbh->prepare("insert into employee values ('Aladdin','Arabian Nights','Adventurer')");

You have to be careful about quotation marks. It's usually simpler to use the qq function (which is just a generalized quotation mechanism):

$sql=qq(insert into employee values ('Aladdin','Arabian Nights','Adventurer'));
$sth=$dbh->prepare($sql);

Once you have a statement prepared, you can execute it with the execute function:

$sth->execute() or die "problem executing statement";

prepare also lets you bind variables so that you don't have to repeat them. For example, if you want to have a generic way to insert new values, you can prepare your statement like this:

$inserth=$dbh->prepare("insert into employee values (?,?,?)");

Then, to execute the statement, you supply the values to fill in for each ?:

$inserth->execute('Aladdin','Arabian Nights','Adventurer') or die "problem executing statement";

When executing statements that return data, the results are also accessed through the statement handle. After execution, $sth->fetchrow_array returns a row from your results. This function returns an array, and you can access the columns in each sql row as members of the perl array. As fetchrow_array returns only one row, you call it continuously until it stops returning rows. For example:

 sql=qq(select name,jobtitle from employee);
 $sth=$dbh->prepare($sql);
 $sth->execute() or die "problem executing statement";
 while(@row=$sth->fetchrow_array)
 {
   print "$row[0] $row[1] \n";
 }

Parsing HTML with Perl

The Perl module HTML::Element provides a structured way to represent HTML elements (starting with <tag>, having some attributes and children, and finishing with </tag>). Any HTML document can be represented as a tree made up of HTML::Elements. For example, consider the following HTML page:

<html>
<head>
<title>List of Employees</title>
</head>
<body>
<center>
<h1>Employees</h1> <br>

<table>
<tr>
   <td>Name</td><td>Department</td><td>Title</td>
</tr>
<tr>
   <td>Alice</td><td>Wonderland</td><td>Lost traveler</td>
</tr>
<tr>
   <td>Peter</td><td>Neverland</td><td>Team leader</td>
</tr>
</table>
</center>

</body>
</html>

This document can be represented in a tree format:

<html> 
  <head> 
    <title> 
      "List of Employees"
  <body> 
    <center> 
      <h1> 
        "Employees"
      <br> 
      <table> 
        <tr> 
          <td> 
            "Name"
          <td> 
            "Department"
          <td> 
            "Title"
        <tr> 
          <td> 
            "Alice"
          <td> 
            "Wonderland"
          <td> 
            "Lost traveler"
        <tr> 
          <td> 
            "Peter"
          <td> 
            "Neverland"
          <td>
            "Team leader"

Notice the hierarchical relationships in the tree. For example, the <html> node has two direct children, <head> and <body>, and these elements have their own children. The Perl module HTML::Tree builds this tree from an HTML document. You can find more about HTML::Trees here. In order to use HTML::Trees, you have to use the HTML::TreeBuilder module.

 use HTML::TreeBuilder;
 $tree=HTML::TreeBuilder->new;

This will create a new tree for you. You can then use this tree to parse an HTML file. There are two ways to parse HTML, either directly with parse_file, or by parsing individual strings with parse.

$tree->parse_file('downloaded.html');

You can print the contents of an HTML::Tree by calling the dump function.

$tree->dump;

You can call the parse function several times for different content, but before parsing new data, you need to empty the existing parsed data in the tree with the delete function.

$tree->delete;

HTML Scanning

This section details an example that captures science headlines from an HTML document from BBC Science News. Assuming you have downloaded the web page to bbc.html, you can build a tree from it:

#!/usr/bin/perl

use HTML::TreeBuilder;
$tree=HTML::TreeBuilder->new;
$tree->parse_file("bbc.html");

Now you can use this tree to retrieve information from the document. The look_down function on an HTML::Tree or HTML::Element is used to return any child satisfying some criterion:

$tree->look_down(SOMEATTRIBUTE,ITSVALUE);

For example, the following code will return the set of hyperlink HTML::Elements in the page, and put them into an array.

@links=$tree->look_down("_tag","a");

The return value can be a variable instead of array:

$first_link=$tree->look_down("_tag","a");

In this caselook_down returns the first hyperlink element found.

The power of the look_down function comes from the ability to specify further criteria like so:

$tree->look_down(SOMEATTRIBUTE,ITSVALUE, 
      sub { SOME FUNCTION CODE HERE });

This will return any element that has SOMEATTRIBUTE with value ITSVALUE, and the function specified in look_down returns 1. Usually this function evaluates other attributes of the element. The element that is being evaluated is referred as $_[0]. For example, the following code returns all hyperlinks that contain URLs to cnn.com.

@links=$tree->look_down("_tag","a",
          sub { 
                if($_[0]->attr("href") =~ /www.cnn.com/)
                {
                  return 1;
                }
                return 0;
              });

Note that we are accessing the href attribute of the element and using a regular expression to match it against www.cnn.com.

To actually find news headlines, we need to determine the characteristics of the bbc.html file to discern what the headlines look like. For example, this page has a main headline followed by a description:

	<div class="mvb">
		<a class="tsh" href="/2/hi/health/7026443.stm">
			Chilli compound fires painkiller
		</a>
</div>
	<div class="mvb">
			A chemical from chilli peppers may be able to kill pain without affecting touch or movement.
</div>
.......

	<div class="mvb">
		<a href="/2/hi/science/nature/7023731.stm"><img src="http://newsimg.bbc.co.uk/media/images/44151000/jpg/_44151791_art_66pic.jpg" align="left" width="66" height="49" alt="Artists impression of Gryposaurus monumentensis (copyright: Larry Felder)" border="0" vspace="0" hspace="0"></a>
		<img src="http://newsimg.bbc.co.uk/shared/img/o.gif" align="left" width="5" height="49" alt="" border="0" vspace="0" hspace="0">
		<a class="shl" href="/2/hi/science/nature/7023731.stm">
			Duck-billed dinosaur had big bite
		</a>
			<br clear="all" />
	</div>
	<div class="o">
			A new species of duck-billed dinosaur that had up to 800 teeth is described by scientists.
</div>
.......
	<div class="mvb">
		<a href="/2/hi/technology/7024672.stm"><img src="http://newsimg.bbc.co.uk/media/images/44152000/jpg/_44152097_tombstone_66pic.jpg" align="left" width="66" height="49" alt="Before and after tombstone" border="0" vspace="0" hspace="0"></a>
		<img src="http://newsimg.bbc.co.uk/shared/img/o.gif" align="left" width="5" height="49" alt="" border="0" vspace="0" hspace="0">
		<a class="shl" href="/2/hi/technology/7024672.stm">
			Scans reveal lost gravestone text
		</a>
			<br clear="all" />
	</div>
	<div class="o">
		        Illegible words on church headstones could be read once more thanks to a new scan technology.
</div>

In this case, it's the hyperlinks that have class types tsh and shl that we are interested in, so we look down to find those class types:

 @links=$tree->look_down('_tag','a',
         sub {
            $_[0]->attr('class') eq "tsh" ||
            $_[0]->attr('class') =~m/hl$/;
         });

Then by printing out these hyperlink elements as text, we can get the headlines:

 foreach $link (@links)
 {
   print $link->as_text;
 }

However, these elements just give us the headlines, not the summaries. If you look at the BBC html document, the headlines are inside a

element. The summaries are in the following

. So, we can reach those summaries by first moving to the parent of the hyperlink HTML::Element and then going to the next sibling of that parent:

 foreach $link (@links)
 {
   print $link->as_text;
   print $link->parent->right->as_text;
 }

In general, you have to be careful about these kind of operations. If, for example, parent was undefined, the above code would be halted during execution with an error. It's therefore important to always check if $link->parent is actually defined before following the pointer. Similarly, you would need to check if $link->parent->right was defined.

Finally, you can use the LWP::UserAgent module to make web requests to get the contents of a page and pass those contents to the tree all in one perl script. For example:

#!/usr/bin/perl -w

use LWP::UserAgent;
use HTML::TreeBuilder;

$ua=LWP::UserAgent->new;
$req=$ua->get("http://news.bbc.co.uk/2/hi/science/nature/default.stm");

$ua->agent('Mozilla/5.0'); #you can modify several internal parameters, such as browser identification

$tree=HTML::TreeBuilder->new;
$tree->parse($req->as_string);

@links=$tree->look_down('_tag','a', #get all links
         sub {
            $_[0]->attr('class') eq "tsh" || # class name is tsh
            ($_[0]->parent->attr('class') eq "arr" && 
             $_[0]->attr('href') =~ m/science/) || # or their url contain the keyword science and their parents belong to class arr
            $_[0]->attr('class') =~ m/hl$/; # or their class name ends with hl
         });

foreach $link (@links)
{
  print $link->as_text . ":";

  if( !($link->parent->attr('class') eq "arr"))
  {
    print $link->parent->right->as_text . "\n";
  }
  else
  {
    print "Sideline \n";
  }
}

Additional examples can be found in the Perl documentation for Tree Scanning here.